CellColoc Documentation

CellColoc is a Python package for interactive, segmentation-based colocalization analysis in microscopy images. It combines reusable core analysis logic with project-specific user scripts that can be executed step by step in VS Code or notebook-like environments.

CellColoc supports both neural-network segmentation with Cellpose and classical threshold-based segmentation on a per-channel basis, including ROI- wise analysis, occupancy quantification, optional third-channel logic, fast post hoc refinement, and interactive napari inspection.

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