cellcoloc.LoadedImageChannels

class cellcoloc.LoadedImageChannels(source_path, paths, voxel_scale_zyx, cell_image, marker_image, optional_region_image, raw_shape_tzcyx, raw_z_size, is_3d, metadata, analysis_z_bounds=None, z_projection_method=None)[source]

Store the loaded analysis channels and related metadata.

The stored image arrays may either represent the original ZYX channels loaded from disk or a derived analysis view, for example a z-projection prepared before ROI drawing and segmentation.

__init__(source_path, paths, voxel_scale_zyx, cell_image, marker_image, optional_region_image, raw_shape_tzcyx, raw_z_size, is_3d, metadata, analysis_z_bounds=None, z_projection_method=None)

Methods

__init__(source_path, paths, ...[, ...])

Attributes

`source_path`
`paths`
`voxel_scale_zyx`
`cell_image`
`marker_image`
`optional_region_image`
`raw_shape_tzcyx`
`raw_z_size`
`is_3d`
`metadata`
`analysis_z_bounds`
`z_projection_method`