cellcoloc.ColocalizationTables

class cellcoloc.ColocalizationTables(detailed, summary, overview, marker_properties=None, third_channel_properties=None, roi_cell_summary=None, roi_marker_summary=None, roi_third_channel_summary=None)[source]

Bundle all exported multi-channel colocalization result tables.

detailed: Per-overlap table containing one row per cell-marker overlap event.

summary: Main per-cell colocalization table for the cell channel, augmented with cell-channel morphology metrics.

overview: Existing per-ROI colocalization overview table. This is still exposed under the historic attribute name overview for backward compatibility, even though the Excel export sheet is named roi_coloc_overview.

marker_properties: Per-object morphology table for the segmented marker channel.

third_channel_properties: Optional per-object morphology table for the segmented third channel.

roi_cell_summary: Per-ROI means of the cell-channel morphology metrics.

roi_marker_summary: Per-ROI means of the marker-channel morphology metrics.

roi_third_channel_summary: Optional per-ROI means of the third-channel morphology metrics.

__init__(detailed, summary, overview, marker_properties=None, third_channel_properties=None, roi_cell_summary=None, roi_marker_summary=None, roi_third_channel_summary=None)

Methods

__init__(detailed, summary, overview[, ...])

Attributes

`detailed`
`summary`
`overview`
`marker_properties`
`third_channel_properties`
`roi_cell_summary`
`roi_marker_summary`
`roi_third_channel_summary`