Example data set ================= In order to follow along with the examples provided in this documentation, you may download the following example data sets from Zenodo: .. image:: https://img.shields.io/badge/Example%20Datasets-10.5281%2Fzenodo.20788293-blue :target: https://doi.org/10.5281/zenodo.20788293 :alt: CellColoc example dataset on Zenodo These example data set is provided to facilitate testing, validation, and demonstration of *CellColoc*'s functionality. It includes a variety of microscopy files in different formats, along with associated metadata and documentation. The Zenodo record contains two example data sets: * **3D multichannel microscopy example**, consisting of a three-channel fluorescence microscopy image of hippocampal CA1 tissue. The channels correspond to Cx3cr1-tdTomato, Iba1 immunostaining, and DAPI. The tdTomato channel labels recombined CX3CR1-positive cells, the Iba1 channel labels microglia/macrophage-lineage cells, and the DAPI channel labels cell nuclei and is used for anatomical orientation and quality control. * **DAPI stained nuclei from Rathar (2018)**, originally published by Raissa Rathar on `Zenodo `_. This data set contains DAPI-stained nuclei and corresponding TexasRed-stained cells and is included here as additional example image data for testing and demonstration purposes. Licensing and attribution ---------------------------- The redistributed Rathar (2018) data set is used under the terms of the Creative Commons Attribution 4.0 International license (CC BY 4.0). Original data set: Rathar, Raissa. *DAPI stained nuclei more or less clustered*. Zenodo, Version 1.0.0, 2018. DOI: `10.5281/zenodo.1304211. `_ When using files from the redistributed Rathar data set, please cite the original Zenodo record in addition to citing CellColoc where appropriate. The remaining files in the *CellColoc* example data set were provided as example data for this documentation. Please refer to the `Zenodo record `_ for file-level licensing and attribution information.